Publications in collaboration with researchers from Texas A&M University System (23)

2016

  1. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

    Autophagy, Vol. 12, Núm. 1, pp. 1-222

  2. Erratum to: Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) (Autophagy, 12, 1, 1-222, 10.1080/15548627.2015.1100356

    Autophagy

2012

  1. Supervised protein family classification and new family construction

    Journal of Computational Biology, Vol. 19, Núm. 8, pp. 957-967

  2. Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

    Nature Genetics, Vol. 44, Núm. 9, pp. 1060-1065

2011

  1. Trichoderma: The genomics of opportunistic success

    Nature Reviews Microbiology, Vol. 9, Núm. 10, pp. 749-759

  2. Genomic analysis of the necrotrophic fungal pathogens sclerotinia sclerotiorum and botrytis cinerea

    PLoS Genetics, Vol. 7, Núm. 8

  3. Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

    Genome Biology, Vol. 12, Núm. 4

2010

  1. PoGO: Prediction of Gene Ontology terms for fungal proteins

    BMC Bioinformatics, Vol. 11

  2. Identifying gene clusters within localized regions in multiple genomes

    Journal of Computational Biology, Vol. 17, Núm. 5, pp. 657-668

  3. Diagnostic sensitivity and specificity of different methods used by two laboratories for the detection of Phytophthora ramorum on multiple natural hosts

    Plant Pathology, Vol. 59, Núm. 2, pp. 289-300

2008

  1. Gene function prediction using protein domain probability and hierarchical Gene Ontology information

    Proceedings - International Conference on Pattern Recognition

  2. The rice blast story: From genome sequence to function

    Exploitation of Fungi: Symposium of the British Mycological Society Held at the University of Manchester September 2005 (Cambridge University Press), pp. 10-22

  3. Root infection and systemic colonization of maize by Colletotrichum graminicola

    Applied and Environmental Microbiology, Vol. 74, Núm. 3, pp. 823-832

  4. Dimerization controls the activity of fungal elicitors that trigger systemic resistance in plants

    Journal of Biological Chemistry, Vol. 283, Núm. 28, pp. 19804-19815

2007

  1. Quantitative detection of double-stranded RNA-mediated gene silencing of parasitism genes in Heterodera glycines

    Journal of Nematology, Vol. 39, Núm. 2, pp. 145-152

  2. Identifying clusters of functionally related genes in genomes

    Bioinformatics, Vol. 23, Núm. 9, pp. 1053-1060

  3. A systematic analysis of T-DNA insertion events in Magnaporthe oryzae

    Fungal Genetics and Biology, Vol. 44, Núm. 10, pp. 1050-1064

2006

  1. Automatic annotation of protein functional class from sparse and imbalanced data sets

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

  2. Expression and regulation of the Arabidopsis thaliana cel1 endo 1,4 β glucanase gene during compatible plant-nematode interactions

    Journal of Nematology, Vol. 38, Núm. 3, pp. 354-361

  3. Bioinformatic analysis of expressed sequence tags derived from a compatible Alternaria brassicicola-Brassica oleracea interaction

    Molecular Plant Pathology, Vol. 7, Núm. 2, pp. 113-124